Phylogenetic Networks - Concepts, Algorithms and Applications
Daniel H. Huson, Regula Rupp, Celine Scornavacca
The evolutionary history of species is traditionally represented using a rooted phylogenetic tree.
However, when reticulate events such as hybridization, horizontal gene transfer or recombination are
believed to be involved, phylogenetic networks that can accommodate non-treelike evolution have an
important role to play. This book provides the first interdisciplinary overview of phylogenetic networks.
Beginning with a concise introduction to both phylogenetic trees and phylogenetic networks, the fundamental
concepts and results are then presented for both rooted and unrooted phylogenetic networks. Current
approaches and algorithms available for computing phylogenetic networks from different types
of datasets are then discussed, accompanied by examples of their application to real biological datasets.
The book also summarises the algorithms used for drawing phylogenetic networks, along with the existing
software for their computation and evaluation.
Hardback 374 pp ISBN 9780521755962
Part I. Introduction:
- Sequence alignment
- Phylogenetic trees
- Phylogenetic networks
Part II. Theory:
- Clusters and rooted phylogenetic networks
- Splits and unrooted phylogenetic networks
Part III. Algorithms and Applications:
- Phylogenetic networks from clusters
- Phylogenetic networks from splits
- Phylogenetic networks from sequences
- Phylogenetic networks from distances
- Phylogenetic networks from trees
- Phylogenetic networks from triplets or quartets
- Drawing phylogenetic networks
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